eLabFTW is the most popular open source electronic lab notebook for research labs.

elabftw

Last update: Jan 4, 2023

Related tags

Web Applications mysql docker php laboratory notebook lims

Overview

A free, modern, versatile, secure electronic lab notebook for researchers

Official website | Live demo | Documentation | Dedicated hosting

Description

eLabFTW is an electronic lab notebook manager for research teams.

It lets you store and organize your research experiments easily. It also features a database where any kind of objects (such as antibodies, plasmids, cell lines, boxes, etc.) can be stored. It is accessed via the browser. Several research teams can be hosted on the same installation. This means eLabFTW can be installed at the institute level and host all team members at the same place. This is what is done at Institut Curie and in several other research centers around the globe.

Click the image below to see it in bigger size:

eLabFTW is designed to be installed on a server, and people from the team can log in from their browser.

Without a server, even an old computer with 1 GB of RAM and an old CPU can be used. Make sure to install a recent GNU/Linux distribution on it and plug it to the intranet.

Installation

eLabFTW can easily be installed on any GNU/Linux server. It requires at least 512 MB of RAM (1 GB recommended) and 300 MB of disk space. Installation is done through Docker, so Docker needs to be installed on the server. Since it runs in a Docker container, php, webservers or mysql do not have to be installed on your server. Everything is provided by the containers so different versions and extensions do not matter. This makes upgrading versions much easier.

The documentation explains everything:

Installation instructions

Contributing

eLabFTW is a collaborative project. Your contributions are very welcome! Have a look at the contributing page to see how you can help with translation or code.

If you have found a security issue, please report it by email to the address associated to my GPG key:

gpg --search-keys "Nicolas CARPi"

Support

Free support is available through GitHub issues. Please open an issue if you have a problem, want to make a suggestion, ask a question or discuss a feature.

You can also join the chat room on Gitter.

Pro support, dedicated hosting or commercial license are available from Deltablot.

Subscribe to the newsletter to be notified when a new release is out!

Or use GitHub to follow releases:

Funding

As you know, eLabFTW is distributed without charge.

If you find this project useful, please consider making a small donation either:

as a GitHub Sponsor
or with Liberapay

This project is backed by Institut Curie and Deltablot.

Thank you for using eLabFTW. I hope it will bring happiness to your lab ;)

Related projects

These projects were created by users of eLabFTW, check them out if interested!

din14970/elabftwqrprint: python library to print QR codes from database objects
shabihsherjeel/nionswift_elabftw_plugin: python plugin for Nionswift
iam-cms/elabapy-cli: command line interface for elabftw API

Comments

Bug in OpenSSL : Timestamping error

When attempting to timestamp, we have gotten the error below. Can anybody help us out?

System command failed: 139639965218464:error:2F067065:time stamp routines:TS_CHECK_SIGNING_CERTS:ess signing certificate error:ts_rsp_verify.c:291:, Verification: FAILED”
bug

opened by cbgorman 83
Equation editor

I'm not sure how easy/hard it would be to implement, but I think it would be cool to be able to insert equations into experiments, similar to the way tables are inserted now. A quick Google search found a php equation editor here: https://www.codecogs.com/latex/eqneditor.php; I'm sure there are others out there too.
feature request fixed in hypernext

opened by dickinson-lab 73
502 bad gateway nginx problem
Description of the problem

Suddenly, since yesterday elabftw is not reachable, we get this error in the browser: 502 bad gateway nginx

I have check the log (docker logs elabftw) and the outpuy is:

2017-01-19 06:00:51,014 CRIT Supervisor running as root (no user in config file) Unlinking stale socket /tmp/supervisor.sock 2017-01-19 06:00:51,342 INFO RPC interface 'supervisor' initialized 2017-01-19 06:00:51,342 CRIT Server 'unix_http_server' running without any HTTP authentication checking 2017-01-19 06:00:51,342 INFO supervisord started with pid 37 2017-01-19 06:00:52,345 INFO spawned: 'nginx' with pid 40 2017-01-19 06:00:52,348 INFO spawned: 'php7-fpm' with pid 41 2017-01-19 06:00:52,733 INFO exited: php7-fpm (exit status 78; not expected) 2017-01-19 06:00:53,734 INFO success: nginx entered RUNNING state, process has stayed up for > than 1 seconds (startsecs) 2017-01-19 06:00:53,736 INFO spawned: 'php7-fpm' with pid 43 2017-01-19 06:00:53,794 INFO exited: php7-fpm (exit status 78; not expected) 2017-01-19 06:00:55,798 INFO spawned: 'php7-fpm' with pid 44 2017-01-19 06:00:55,838 INFO exited: php7-fpm (exit status 78; not expected) 2017-01-19 06:00:58,844 INFO spawned: 'php7-fpm' with pid 45 2017-01-19 06:00:58,906 INFO exited: php7-fpm (exit status 78; not expected) 2017-01-19 06:00:59,907 INFO gave up: php7-fpm entered FATAL state, too many start retries too quickly ln: /etc/nginx/conf.d/elabftw.conf: File exists

the day before the output was: 2017-01-18 06:00:50,193 CRIT Supervisor running as root (no user in config file) Unlinking stale socket /tmp/supervisor.sock 2017-01-18 06:00:50,517 INFO RPC interface 'supervisor' initialized 2017-01-18 06:00:50,517 CRIT Server 'unix_http_server' running without any HTTP authentication checking 2017-01-18 06:00:50,517 INFO supervisord started with pid 38 2017-01-18 06:00:51,519 INFO spawned: 'nginx' with pid 41 2017-01-18 06:00:51,520 INFO spawned: 'php7-fpm' with pid 42 2017-01-18 06:00:52,990 INFO success: nginx entered RUNNING state, process has stayed up for > than 1 seconds (startsecs) 2017-01-18 06:00:52,990 INFO success: php7-fpm entered RUNNING state, process has stayed up for > than 1 seconds (startsecs) ln: /etc/nginx/conf.d/elabftw.conf: File exists

Any idea about the reason of this error that came up suddenly?

Informations

Elabftw version (visible in Sysadmin panel) : 1.4.2

Installation method (git, docker or zip archive) : docker

Operating system + version : debian 8.6, 64 bits

Browser used (firefox/chrome) : firefox and chrome

more info required community support
opened by athasd 48
Problem in defining server email
Description of the problem

I am trying to set the email for the server. I have tried several options including gmail, institutional mail address and SMTP2GO and in all cases a message saying that: "Encoded data is shorter than expected." appear and the settings are not saved. Can you please advise? Thanks. OK

Informations

Elabftw version (visible in Sysadmin panel) :1.4.3

Installation method (git, docker or zip archive) :docker

Operating system + version :Windows Server 2012

Browser used (firefox/chrome) : Firefox

For git/zip installation method:

PHP version:

MySQL version:

Webserver (apache/nginx) + version :

bug community support
opened by 2kleio 42
Upgrade from 1.84 to 2.0 and then to 3.2
Description of the problem

Dear Nicolas

I know we've being slow in updating our elabFTW, probably because we favor stability. But now I was going to test the new version before updating the production app and I encountered some problems.

the command: yarn buildall is not available in yarn.

what would be the sequences of commands to upgrade first to 2.0 and then 3.2

sorry but by reading the documentation or messages I couldn't find an easy way to follow, in particular for non-docker installation.

thanks

felipet

Please fill the requested information below:

Information

Elabftw version (visible in Sysadmin panel) : 1.84

Installation method (docker or git/zip archive) : git

Operating system + version : Centos

Browser used (firefox/chrome) : chrome

For non docker users:

PHP version: 7.3

MySQL version:

Webserver (apache/nginx) + version :

question community support
opened by felipetraj 40
Update from 1.2.0p1 to 1.2.4 on Ubuntu 14.04 LTS Server with PHP 5.5
Hi, after updating to the newest Version of elabftw on our webserver, I get the message: "Your version of PHP isn't recent enough. Please update your php version to at least 5.6" Version 1.2.0p1 was working like a charm.

We're using Ubuntu 14.04 LTS with official support for 5.5.9 only. Is there a way to use the newest Version of elabftw on 14.04 without adding 3rd-party repos?

Informations

Elabftw version (visible in sysconfig.php) : 1.2.4

Installation method (git, docker or zip archive) : zip archive

Operating system + version : Ubuntu 14.04.4 LTS

PHP version : PHP 5.5.9-1ubuntu4.17 (cli) (built: May 19 2016 19:05:57)

MySQL version : mysql Ver 14.14 Distrib 5.5.49, for debian-linux-gnu (x86_64) using readline 6.3

Webserver (apache/nginx) + version : Server version: Apache/2.4.7 (Ubuntu)

Browser used (firefox/chrome) :

question
opened by ecdlguy 39
Php out of date on upgrade and then problems pointing to the elabftw software
Description of the problem

We are unix novices but use elabftw. I was informed that elabftw was out of date, so I went to the directory where it is installed /elabftw and did a 'git pull'. Now everybody in lab gets an error that we don't have the latest version of php. I dig around on the web and found (and ran) 'apt-get upgrade'. This upgraded a number of packages on our Digital Ocean server. Still not the version of PHP we need (5.6). I dig around on the web and found (and ran) 'sudo apt-add-repository ppa:ondrej/php' and then did another 'apt-get upgrade'. The command 'php -v' told me I was at version 5.6. However, now when I go to the website (http://45.55.47.51/login.php), I get a 404 not found on one computer (running chrome) and a "your version of PHP isn't recent enough" on another computer running chrome even after I erase the cache's in chrome on each of them. The problem persists even when I reboot the server.

I dig around on the web and find something about /etc/apache2/sites-available, but at this point, I'm out of my league. Furthermore, I don't know why two web browsers give me different responses.

We are unfortunately back to paper notebooks until we can get this resolved.

C

Informations

Elabftw version (visible in sysconfig.php) : the latest -- couldn't find it in sysconfig.php

Installation method (git, docker or zip archive) : git

Operating system + version : Ubuntu 14.04

PHP version : 5.6.24

MySQL version : 5.5.50

Webserver (apache/nginx) + version : apache 2.4.7

Browser used (firefox/chrome) : chrome
opened by cbgorman 37
Understanding timestamping behaviour
Question

Hi, I'm a new user and very much enjoying exploring the features of eLabFTW. I'm trying to understand how the timestamping concept works in elabFTW:

User sets status of experiment to one that allows timestamping (e.g. 'Complete').

User locks experiment.

User clicks timestamp icon and confirms they wish to timestamp.

eLabFTW generates hashes for any files attached to the experiment.

eLabFTW generates a pdf containing the entry for the experiment, plus a list of filenames of files that have been attached to the experiment, along with their corresponding hash.

eLabFTW hashes this pdf.

eLabFTW transmits this hash to the designated time stamping authority (TSA).

The TSA adds a timestamp to the hash, hashes the combined result and encrypts it using their private key.

The TSA transmits the encrypted timestamp back to eLabFTW which stores it, plus the original pdf used as the basis for the timestamp.

Another user can verify the integrity of the timestamp, by decrypting the encrypted timestamp using the TSA's public key. They then separately hash the pdf of the experiment using the same algorithm, then hash it again in combination with the claimed date/time. The decrypted TSA hash and the newly generated hash are compared. If they are both equal then both the document and timestamp haven't been altered, and the designated TSA provided the timestamp.

Assuming the above is correct:

Clicking on the information icon on the timestamp in eLabFTW shows some different parameters - what do OID and message data refer to?

Is the downloadable asn1 file the encrypted timestamp?

Is the downloadable pdf the original pdf that was hashed before being sent to the TSA?

(assuming above) is this pdf file static (i.e. generated at the time of the timestamp and stored on the server, rather than being dynamically generated from the database entry when requested)?

(assuming above) the timestamp isn't embedded into the downloadable pdf?

(assuming above) to verify the integrity of the original experimental entry, you only need the pdf and asn1 files, neither the original database record nor any attached files are required?

Attached files can be verified by hashing them separately and confirming that the hash matches the value shown in the timestamped pdf, therefore meaning the attached files are effectively timestamped too?

Apologies, I appreciate this is quite a long post, hopefully my understanding is correct and no lengthy replies are required. Thank you in advance for your support with this.

All the best, Stuart

Information

Elabftw version (visible in Sysadmin panel) : 1.6.2

Installation method (git, docker or zip archive) : docker

Operating system + version : Ubuntu 16.04.3 LTS

Browser used (firefox/chrome) : chrome

question
opened by StuartGHiggins 36
Plasmid viewer via OpenVectorEditor with preview in attached files list

After my first proof-of-concept implementation (#2240) of a plasmid viewer (#277) I am happy to open a PR with a better implementation. It still only allows to visualize Genbank files but there are no additional php files necessary anymore. It is primarily handled by JS from within uploads.ts.

Cheers, Marcel

opened by MarcelBolten 33

Error on update to version 4.3.4

After reading the release notes for 4.3.0, I added the changes to /etc/elabftw.yml and then tried to update the mysql database, but got the following:

root@Gorman:~# docker pull mysql/mysql-server:8.0
8.0: Pulling from mysql/mysql-server
1866ca302f77: Pull complete
7208ad90232c: Pull complete
b2d9c817f662: Pull complete
3292176f57b6: Pull complete
d77130a2f17e: Pull complete
47bc31a509ca: Pull complete
fade2a0af17d: Pull complete
Digest: sha256:1a8d2a5584e53a42a43cbd430ae340a36942afee9e14a86624a2cb2d90ce655b
Status: Downloaded newer image for mysql/mysql-server:8.0
docker.io/mysql/mysql-server:8.0

root@Gorman:~# elabctl restart
Pulling mysql (mysql:8.0)...
8.0: Pulling from library/mysql
824b15f81d65: Already exists
c559dd1913db: Already exists
e201c19614e6: Already exists
f4247e8f6125: Already exists
dc9fefd8cfb5: Already exists
32cfafb64fee: Already exists
c9caad7ee0fc: Already exists
c8ed38840e96: Pull complete
5a172dc2c4c7: Pull complete
d800b83bd024: Pull complete
b20e07df03fa: Pull complete
22e8ad187ab6: Pull complete
Digest: sha256:bed914af3f2dea400c4bc83136d6b3a8cf7edcf96f5c08bbbdec8a10cc021a5d
Status: Downloaded newer image for mysql:8.0
Creating mysql
Creating elabftw

When I try to access my server, I am told to execute this command, so I did and got

root@Gorman:~# docker exec -it elabftw bin/console db:update
Database check
==============
Current version: 74
Required version: 91
An upgrade is required.
Database update starting
========================
Executing:  START TRANSACTION;
Executing:  ALTER TABLE `api_keys` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  CREATE TABLE IF NOT EXISTS `authfail` ( `id` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT, `users_id` INT(10) UNSIGNED NOT NULL , `attempt_time` DATETIME NOT NULL DEFAULT CURRENT_TIMESTAMP, `device_token` VARCHAR(255) NULL DEFAULT NULL, PRIMARY KEY (`id`));
Executing:  ALTER TABLE `authfail` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `config` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_comments` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_links` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_revisions` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_steps` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_templates` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_templates_links` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_templates_revisions` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `experiments_templates_steps` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `favtags2users` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `groups` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `idps` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items_comments` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items_links` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items_revisions` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items_steps` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;
Executing:  ALTER TABLE `items_types` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_0900_ai_ci;

In Db.php line 152:

  SQLSTATE[HY000]: General error: 1366 Incorrect string value: '\x80' for column 'canre
  ad' at row 1


db:update

I found a discussion about this, but the "solution" was gibberish to me. Is there any advice for a non-unix guru?

community support

opened by cbgorman 31

disappeared experiment for me but not for team/group
Describe the bug

One of my users reported this:

The issue is that I do not find anymore one of my experiments. It disappeared from my list of the experiments and even if I search for it with the “search” tool I do not find it but what is really weird is that other users can find it and visualise it.

The issue appeared with version 3.4.11 but still persistent after update 3.4.12

Steps to reproduce

Issue is persistent with 2 browsers and after purge cache.

Information

Version of eLabFTW (visible in Sysadmin panel): 3.4.12

Operating system (e.g. GNU+Linux/MacOS/Windows): CentOS 7

Browser (e.g. firefox, chrome): Firefox and Safari

more info required
opened by PatrickGlesner 28
bookings with no overlaps

Hello,

The scheduler in elabftw is a nice feature. For example, I can create a bookable category to attach it to a resource such as a scientific instrument. However 2 bookings can have overlaps. It is a problem if one user wants to book an instrument and another user books the same instrument with overlaps.

So a solution could be: in the category, if bookable is checked, another box appears labeled "reservations of this item cannot overlap".

Obviously, if there is already one or more overlaps and you edit the category, you should not be able to uncheck "reservations of this item cannot overlap".

I'm using the hosted version or I have PRO support: YES

Best regards, Yann
feature request priority:medium

opened by yann2084 0
Bump marked from 4.2.3 to 4.2.5
Bumps marked from 4.2.3 to 4.2.5.

Release notes

Sourced from marked's releases.

v4.2.5

4.2.5 (2022-12-23)

Bug Fixes

fix paragraph continuation after block element (#2686) (1bbda68)

fix tabs at beginning of list items (#2679) (e692634)

v4.2.4

4.2.4 (2022-12-07)

Bug Fixes

loose list items are loose (#2672) (df4eb0e)

remove quotes at the end of gfm autolink (#2673) (697ac2a)

use paragraph token in blockquote in list (#2671) (edc857c)

Commits

813234f chore(release): 4.2.5 [skip ci]

a01488a 🗜️ build [skip ci]

e692634 fix: fix tabs at beginning of list items (#2679)

1bbda68 fix: fix paragraph continuation after block element (#2686)

26e2942 chore(deps-dev): Bump rollup from 3.7.3 to 3.7.5 (#2689)

b32896d chore(deps-dev): Bump eslint from 8.29.0 to 8.30.0 (#2690)

2d5af86 clarify dropdown location (#2688)

d94144e chore(deps-dev): Bump rollup from 3.6.0 to 3.7.3 (#2681)

f2f9969 chore(release): 4.2.4 [skip ci]

4c24702 🗜️ build [skip ci]

Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR

@dependabot recreate will recreate this PR, overwriting any edits that have been made to it

@dependabot merge will merge this PR after your CI passes on it

@dependabot squash and merge will squash and merge this PR after your CI passes on it

@dependabot cancel merge will cancel a previously requested merge and block automerging

@dependabot reopen will reopen this PR if it is closed

@dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually

@dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

dependencies javascript
opened by dependabot[bot] 1
Bump webpack-cli from 5.0.0 to 5.0.1
Bumps webpack-cli from 5.0.0 to 5.0.1.

Release notes

Sourced from webpack-cli's releases.

v5.0.1

5.0.1 (2022-12-05)

Bug Fixes

make define-process-env-node-env alias node-env (#3514) (346a518)

Changelog

Sourced from webpack-cli's changelog.

5.0.1 (2022-12-05)

Bug Fixes

make define-process-env-node-env alias node-env (#3514) (346a518)

Commits

4a0f893 chore(release): publish new version

9de982c chore: fix cspell

32d26c8 chore(deps-dev): bump cspell from 6.15.1 to 6.16.0 (#3517)

2788bf9 chore(deps-dev): bump eslint from 8.28.0 to 8.29.0 (#3516)

ac88ee4 chore(deps-dev): bump lint-staged from 13.0.4 to 13.1.0 (#3515)

346a518 fix: make define-process-env-node-env alias node-env (#3514)

3ec7b16 chore(deps): bump yeoman-environment from 3.12.1 to 3.13.0 (#3508)

c8adfa6 chore(deps-dev): bump @types/node from 18.11.9 to 18.11.10 (#3513)

0ad8cc2 chore(deps-dev): bump cspell from 6.15.0 to 6.15.1 (#3512)

d30f261 chore(deps-dev): bump ts-loader from 9.4.1 to 9.4.2 (#3511)

Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR

@dependabot recreate will recreate this PR, overwriting any edits that have been made to it

@dependabot merge will merge this PR after your CI passes on it

@dependabot squash and merge will squash and merge this PR after your CI passes on it

@dependabot cancel merge will cancel a previously requested merge and block automerging

@dependabot reopen will reopen this PR if it is closed

@dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually

@dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

dependencies javascript
opened by dependabot[bot] 1
Bump ve-sequence-utils from 5.2.8 to 5.2.9
Bumps ve-sequence-utils from 5.2.8 to 5.2.9.

Changelog

Sourced from ve-sequence-utils's changelog.

v5.2.9

adding one more check for updating circularity bca474e

Commits

See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR

@dependabot recreate will recreate this PR, overwriting any edits that have been made to it

@dependabot merge will merge this PR after your CI passes on it

@dependabot squash and merge will squash and merge this PR after your CI passes on it

@dependabot cancel merge will cancel a previously requested merge and block automerging

@dependabot reopen will reopen this PR if it is closed

@dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually

@dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

dependencies javascript
opened by dependabot[bot] 1
Bump typescript from 4.9.3 to 4.9.4
Bumps typescript from 4.9.3 to 4.9.4.

Release notes

Sourced from typescript's releases.

TypeScript 4.9.4

For release notes, check out the release announcement.

For the complete list of fixed issues, check out the

fixed issues query for Typescript v4.9.4.

Downloads are available on:

npm

NuGet package

Changes:

e2868216f637e875a74c675845625eb15dcfe9a2 Bump version to 4.9.4 and LKG.

eb5419fc8d980859b98553586dfb5f40d811a745 Cherry-pick #51704 to release 4.9 (#51712)

b4d382b9b12460adf2da4cc0d1429cf19f8dc8be Cherry-pick changes for narrowing to tagged literal types.

e7a02f43fce47e1a39259ada5460bcc33c8e98b5 Port of #51626 and #51689 to release-4.9 (#51627)

1727912f0437a7f367d90040fc4b0b4f3efd017a Cherry-pick fix around visitEachChild to release-4.9. (#51544)

This list of changes was auto generated.

Commits

e286821 Bump version to 4.9.4 and LKG.

eb5419f Cherry-pick #51704 to release 4.9 (#51712)

b4d382b Cherry-pick changes for narrowing to tagged literal types.

e7a02f4 Port of #51626 and #51689 to release-4.9 (#51627)

1727912 Cherry-pick fix around visitEachChild to release-4.9. (#51544)

See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR

@dependabot recreate will recreate this PR, overwriting any edits that have been made to it

@dependabot merge will merge this PR after your CI passes on it

@dependabot squash and merge will squash and merge this PR after your CI passes on it

@dependabot cancel merge will cancel a previously requested merge and block automerging

@dependabot reopen will reopen this PR if it is closed

@dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually

@dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

dependencies javascript
opened by dependabot[bot] 1
Bump luxon and @types/luxon
Bumps luxon and @types/luxon. These dependencies needed to be updated together. Updates luxon from 3.1.1 to 3.2.0

Changelog

Sourced from luxon's changelog.

3.2.0 (2022-12-29)

Allow timeZone to be specified as an intl option

Fix for diff's handling of end-of-month when crossing leap years (#1340)

Add Interval.toLocaleString() (#1320)

Commits

c8f7191 bump to 3.2.0

f9917c4 clarify equality docstring

a6f2737 allow timeZone to be specified as an intl option

f8285c7 find diff by duration hash instead of using repeated addition to cursor (#1340)

d607d8f remove extra param from tokenForPart

7e5d24d Add Interval.toLocaleString() (#1320)

See full diff in compare view

Updates @types/luxon from 3.1.0 to 3.2.0

Commits

See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

@dependabot rebase will rebase this PR

@dependabot recreate will recreate this PR, overwriting any edits that have been made to it

@dependabot merge will merge this PR after your CI passes on it

@dependabot squash and merge will squash and merge this PR after your CI passes on it

@dependabot cancel merge will cancel a previously requested merge and block automerging

@dependabot reopen will reopen this PR if it is closed

@dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually

@dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)

@dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

dependencies javascript
opened by dependabot[bot] 1

Releases(4.5.0-beta)

4.5.0-beta(Jan 4, 2023)
Version 4.5.0

Read the blog post: https://www.deltablot.com/posts/release-450/

New features

Major overhaul of permissions system allowing more granular settings (#3993)

Add description field to custom fields defined in metadata (fix #3856)

Allow users to select several options with custom fields dropdown menus (select)

Add an option to hide main text so only extra fields are left (#3989 by Marcel)

Allow setting the ldap attribute used to lookup the user: users can now login with their ldap username for instance (fix #3359)

Add tags:teamssync command to synchronize tags between teams

Add metadata extra fields builder user interface (#3994)

Enhancements

Anonymous sharing is now revokable and using a specific access key rather than the elabid

Allow admins to create tags in their team from the Tag manager panel

Bugfixes

Fix documentation bug in api v2 GET uploads/{ID} in binary format (fix #3983)

Source code(tar.gz)
Source code(zip)
4.4.3(Dec 27, 2022)
Version 4.4.3

Bugfixes:

Fix sync:links function (#3988 by Marcel, fix #3982)

Fix error during deletion if body is empty (#3987 by Marcel)

Hide overflow in OVE preview (#3986 by Marcel)

Enhancements:

Make newly created templates pinned by default

Documentation:

Add documentation on using Swagger UI to interact with local dev server (in apidoc/v2/README.md)

Improve description on read_upload for python lib (see #3983)

Source code(tar.gz)
Source code(zip)
4.4.2(Dec 17, 2022)
Version 4.4.2

Bugfixes:

Prevent a zip filename with too much characters from title. fix #3966

fix relative links in pdf output. fix #3976

fix some apiv2 Location headers after POST. fix #3974

Source code(tar.gz)
Source code(zip)
4.4.1(Dec 14, 2022)
4.4.1

Bugfix

fix issue with Back to listing button when coming from search page. fix #3968

Source code(tar.gz)
Source code(zip)
4.4.0(Dec 13, 2022)
4.4.0

It's finally here! Update to this version should be smooth. No crazy things happening in the mysql side like with 4.3 requiring MySQL 8.0.

Changelog

General note: updating to 4.4.0 from 4.3.0 should not cause any issue during the db:update step. It is highly recommended to update to this version so users can benefit from the bugfixes and new features.

Breaking changes:

Users that use Markdown syntax will have all their experiments labelled as markdown for "content_type" (the rest is labelled "html"). So they might have an issue with experiments that they own that are not in markdown. In that case, they can fix it by going in edit mode of the experiment, clicking the top right menu (three vertical dots) and selecting "Switch editor" two times. Then save the experiment.

Bugfixes:

Fix hidden teams not showing up in Add team menu

Fix mass email from team page using user's email/name instead of the instance's

Don't restrict image size in body (fix #3800)

Fix incorrect semver comparison in Sysconfig Panel

Fix event deletion notification settings not honored

Fix filename download with non-ascii paramaters

Fix filename upon save after displaying it (fix #3797)

Remove deadline when finishing a step

Fix date parsing in APIv1

Fix displaying revisions requiring write access instead of read access (see #2304)

Fix codesample plugin of tinymce clashing with prismjs (fix #3712)

Fix bug where user would end up without a team after login through saml/ldap and auth service sends team information and team is created at that moment

Fix bug where the extra fields defined in metadata would appear duplicated after save of the json code

Enhancements:

Add currently logged in team in user menu

Display number of timestamps over the past 30 days on Sysconfig Panel

Add a new "Sort" menu in show mode with human readable labels

Prevent browser autompletion on Team page of Sysconfig Panel

Allow toggling pin mode in edit and show modes

Visually separate tags in pdf export

Add more columns to CSV scheduler export

Make "Full syntax" link on search page appear like a link

Improve user interface in UCP > Account

Set the default behavior to "Select team" for SAML/LDAP login

Use urlencode on password of smtp to avoid issues with special chars (fix #3748)

Import metadata column of CSV as metadata (fix #3055)

Force including attached files in timestamp pdf (fix #3729 via #3732)

Add toggle body button to links

Display 2FA status and userid of users as badges when listing them in Admin or Sysconfig panels

Default value for PDF/A option changed to 0 to prevent issues with black background PNG files

Templates now can be "Favorite" to be displayed in the Create dropdown

Allow following a link from an external document without having to re-login (fix #3749)

Allow setting a file comment through Apiv2 file creation (fix #3848)

Add a way to filter bookable items by category (fix #1673)

Add live search on scheduler dropdowns

Add a new export menu in view mode

Let user select PDF/A format directly in the export menu, remove the user option

Add possibility to create a zip with PDF/A pdfs

Display team in template listing (fix #3855)

Always save a revision if none exist (1st save)

Remove the font-size in default template (fix #3927)

Make error notifications stay visible longer

Make text editor toolbar sticky (will stay visible when user scrolls down)

Rework how pdf are displayed, more compact layout

New features:

New version for REST API: APIv2, see documentation: https://doc.elabftw.net/api/v2/

Allow switching team from user menu (fix #3842)

Generate a log event on user login/logout

Add user account validity date

Add new compact display option for attachments with a button to toggle it easily

Add possibility to link to an experiment (previously only links to items were possible) (via #3728 by Marcel Bolten)

Add option for LDAP auth to let user select team upon creation (previously only for SAML)

Add visibility and groups filters in show mode (fix #2294)

Add owner filter in show mode (fix #3799)

Allow multiple molecules in Chemdoodle area (#3746)

Allow saving molecule/reaction in .chemjson or export to PNG

Make timestamp archives immutables (fix #3656 via PR #3736)

Allow changing directly start and end date of scheduler event

Allow users to export their experiments from their profile (see #3726)

Add "Show more information" entry in uploaded file menu

Add new dropdown menu on top right (PR #3718)

Add possibility to customize the Support link in help menu

Allow import/export of ELN files

Allow users to import files

Allow display of uploaded txt files (via #3626 by Marcel)

Add button to copy step body into main text with a link that will highlight the step (fix #2407)

Allow users to use templates in markdown (fix #3070)

Add a markdown template for teams as default template

Add menu entry "Open in NMRium" for .jdx files

SAML: add setting to allow duplicate name attributes (fix #3867)

Add a changelog for all entries to record more changes than just the body with the revisions system

Add blank_on_duplicate attribute to extra_fields in metadata

Add created_at, timestamped_at and locked_at to extended search (#3960 by Marcel)

Allow using the API from an external host with javascript (see https://github.com/elabftw/elabapi-javascript-example#readme)

Add dynamic sort for tables (#3890, #3852 by Marcel)

Add white square as user defined symbol

Dev corner:

Use APIv2 for internal calls, this resulted in a lot of code being deleted, which is a good thing.

Coverage data in html now retained by CircleCI in artifacts section

Use the Docker image for CircleCI

Use cache for php-cs-fixer

Fix issue with php-cs-fixer where excluded folders were not excluded

Do full test suite (including api) in CI

Use codeception/c3 to get line coverage of REST API calls

Fix psaml never finding any issue because of incorrect configuration

Add sonar-project.properties file for SonarQube use

Use enums (new PHP 8.1 feature)

Add REST API test to automated test suite

Lots of code rewrite, as always ;)

several contributions from Marcel Bolten that might not be mentioned above!

several other things that are not mentioned above, because the changelog is pretty big with 314 commits!

Source code(tar.gz)
Source code(zip)
4.4.0-beta7(Dec 9, 2022)

44996c095 upgrade tinymce 8841ec204 fix items patch apidoc c2d9aa07f add a changelog to record changes other than body (#3959) 469ad01c8 add blank_on_duplicate attribute to extra_fields in metadata c19664ff4 don't prevent updating an item with previous fix 15c8d7a48 fix issue with incorrect id read during item creation with api v1 ff11db82e remove unused import 38f058a01 when doing autocompletion in body, write Experiment instead of the 4dbb4b08f Add created_at, locked_at (lockedwhen), and timestamped_at (timestampedwhen) to search query (#3960) b226b3af2 don't show create new button on search page 02a7a736a allow OPTIONS http method on /api endpoints a9c8a49c1 add image name in fancybox display 4184bb127 Make quick search great again (#3931) fe40f74f8 always save a revision if none exist (1st save) 93d1b2199 remove the font-size in default template. fix #3927 4923eb78c make error notifications take longer to disappear ae5d3fce9 upgrade aws/aws-sdk-php 079a2e48b upgrade flysystem 61fbab3bd upgrade i18next 78ac18385 upgrade webpack-cli 69edb38d6 Merge branch 'hypernext' of github.com:elabftw/elabftw into hypernext acf51810a dynamic sort icons for tabular show mode (#3890) 0c8f96f6f Merge branch 'hypernext' of github.com:elabftw/elabftw into hypernext a870baa3f sort entity tables in view mode (#3852) c31a8da78 fix issue with teamgroups in some edge cases e6000db71 adjust comment in api controller relative to how query is parsed 806b66740 fix the config apidocv2 a47dc6371 fix elabid autologin e7d02543c make tinymce toolbar sticky 99d20eae3 yarn upgrade 5c48aaad0 make the import step action generate a link for view mode 199ae2df0 allow step highlighting in view mode 5bd8fbc17 bring steps and links on top of uploads in view mode 5747d6d43 add white square as user defined symbol for tinymce c19f76a6d fix users2teams test 82377d538 fix number -> integer in api spec 821a95c94 fix incorrect response when trying to remove last team of user 5d09f9a39 use PDO::FETCH_COLUMN instead of array_column 55bf733c1 fix deadline removal on steps e30202dd4 bring out the permissions settings from the dropdown menu directly in 056b5492a change https error message to include X-Forwarded-Proto mention 1d83963cc add download template menu entry in template view mode on team page a91f4aa77 add canread and canwrite to pdf output 1aa4ae5a0 add note about grepping configuration lines 95446a5f1 put helpers on top on search page 53b120892 add documentation link on api page 19862110e add doc link for @page e820e8f55 make pdfs smaller by removing header and making footer shorter
Source code(tar.gz)
Source code(zip)
4.4.0-beta6(Nov 24, 2022)

d69fd739e fix custom tsa not working. fix #3921 aad47df57 log info instead of error for decoding jwt token on logout 8e452cdc3 composer upgrade 414e6167d yarn upgrade 6abc1ff2a remove unused function 9343d7091 fix an issue where admin could not promote another user to admin b8a461cd2 update sysconfig page latest version label to show "stable" word f642da29e add links in openapi doc readme 8b6818c81 fix the tests 8444cbc65 add apidoc v2 documentation in README file 02690d154 remove apidocchk 8d78bf295 fix last openapi issue 74fe00c08 add command to validate apidocv2 be0a3f10b fix some openapi issues f8ec7649a allow metadata search in api
Source code(tar.gz)
Source code(zip)
4.4.0-beta5(Nov 18, 2022)
fix timestamp password not being correctly set in config

fix issue with extended search in attachment names and comments

Source code(tar.gz)
Source code(zip)
4.4.0-beta4(Nov 16, 2022)

4aa3ac9c8 proper fix for searching for tags across teams 50c94e20b fix experiments templates with write set to team group not showing up in 0c985f6f0 add button in team page/template tab to pin to create menu 24dd378d7 fix issue with null body on template view and double md2html call 290cf22f9 Merge branch 'simon' into hypernext 42fe677a4 fix issue with metadata column csv import when it is here but empty 61e0d1e58 use tiny editor by default on ucp page aea6855af fix deleting tags from admin panel 68e3d6c2b (origin/simon, simon) allow null value for fullname in teamgroups
Source code(tar.gz)
Source code(zip)
4.4.0-beta3(Nov 14, 2022)

Changes since beta2

add cat query param to api doc fix issue with tag filter being incomplete when user is part of multiple teams cleanup old code not useful anymore in reset password controller fix bloxberg not using proxy remove border in body view mode and make comments togglable add tag count in admin panel
Source code(tar.gz)
Source code(zip)
4.4.0-beta2(Nov 3, 2022)
What's Changed

Small changes to UI/UX by @MarcelBolten in https://github.com/elabftw/elabftw/pull/3892

fix step loading from template

fix autocomplete search for old entries

fix "Create experiment from template" button in ucp

fix content_type on template creation

display content_type column for templates

Full Changelog: https://github.com/elabftw/elabftw/compare/4.4.0-beta...4.4.0-beta2
Source code(tar.gz)
Source code(zip)
4.4.0-beta(Nov 2, 2022)
What's Changed

keep search input by @MarcelBolten in https://github.com/elabftw/elabftw/pull/3891

Full Changelog: https://github.com/elabftw/elabftw/compare/4.4.0-alpha5...4.4.0-beta
Source code(tar.gz)
Source code(zip)
4.4.0-alpha5(Nov 2, 2022)

Changes since alpha4:

985462a4f move extended query code to a private function 0cd0bbb23 update french 4aee790ef add live search on scheduler 4a44d03b7 fix profile icons efc5e1fe1 update portuguese bfe2e080e fix indonesian f34debba7 update polish e5fd3db48 update indonesian 3b6395183 add pdf/a zip archive format and remove pdf/a user setting 8da251c56 add export menu in view mode 6e60b9bf6 add extended query param to api doc v2 a92bf3205 move the advancedsearchquery code into AbstractEntity 7942da576 fix incorrect message shown on extended search in show mode 214693ceb fix metadata input duplication on save in edit mode 8256a7f4e allow loading jdx files in nmrium.org c92e887a6 saml: add setting to allow duplicate name attributes. fix #3867 b85a7f1d0 show team in template listing. fix #3855
Source code(tar.gz)
Source code(zip)
4.4.0-alpha4(Oct 25, 2022)
Changes since alpha3

Update apiv2 documentation. New contributor: @bmoneke :tada:

Fix issue with team groups and assigning users from other teams

Allow getting the uploaded file with format=binary through api

Allow users to have templates in markdown (#3070) and teams to have a default template in markdown

Fix a bug in LDAP automatic team assignment

Source code(tar.gz)
Source code(zip)
4.4.0-alpha3(Oct 13, 2022)
5294c2e74 update portuguese (brazilian) translations

439ab6bf5 fix mol file loading from attached

173bde0ab fix weird logout glitch

955ebeaad fix issue with saml login and team+user creation

12ef8dd42 add a way to filter bookable items by category. fix #1673

812cf6ed7 fix file upload on items

7af1c4ceb set the experiments content_type to 2 for users with the use_markdown setting ON

Source code(tar.gz)
Source code(zip)
4.4.0-alpha2(Oct 12, 2022)

https://github.com/elabftw/elabftw/compare/4.4.0-alpha..4.4.0-alpha2?diff=unified
Source code(tar.gz)
Source code(zip)
4.4.0-alpha(Oct 10, 2022)
Alpha version: not for production use!

Changelog for version 4.4.0

Breaking changes:

Experiments previously written in markdown will appear mashed up in view mode. This is because now there is a way to declare what kind of content we have (html or markdown), and by default it is html. To fix it, in edit mode of the experiment, click the top right menu (three vertical dots) and select "Switch editor" two times. Then save the experiment.

Bugfixes:

Fix hidden teams not showing up in Add team menu

Fix mass email from team page using user's email/name instead of the instance's

Don't restrict image size in body (fix #3800)

Fix incorrect semver comparison in Sysconfig Panel

Fix event deletion notification settings not honored

Fix filename download with non-ascii paramaters

Fix filename upon save after displaying it (fix #3797)

Remove deadline when finishing a step

Fix date parsing in APIv1

Fix displaying revisions requiring write access instead of read access (see #2304)

Fix codesample plugin of tinymce clashing with prismjs (fix #3712)

Enhancements:

Add currently logged in team in user menu

Display number of timestamps over the past 30 days on Sysconfig Panel

Add a new "Sort" menu in show mode with human readable labels

Prevent browser autompletion on Team page of Sysconfig Panel

Allow toggling pin mode in edit and show modes

Visually separate tags in pdf export

Add more columns to CSV scheduler export

Make "Full syntax" link on search page appear like a link

Improve user interface in UCP > Account

Set the default behavior to "Select team" for SAML/LDAP login

Use urlencode on password of smtp to avoid issues with special chars (fix #3748)

Import metadata column of CSV as metadata (fix #3055)

Force including attached files in timestamp pdf (fix #3729 via #3732)

Add toggle body button to links

Display 2FA status and userid of users as badges when listing them in Admin or Sysconfig panels

Default value for PDF/A option changed to 0 to prevent issues with black background PNG files

Templates now can be "Favorite" to be displayed in the Create dropdown

New features:

New version for REST API: APIv2, see documentation: https://doc.elabftw.net/api/v2/

Allow switching team from user menu (fix #3842)

Generate a log event on user login/logout

Add user account validity date

Add new compact display option for attachments with a button to toggle it easily

Add possibility to link to an experiment (previously only links to items were possible) (via #3728 by Marcel Bolten)

Add option for LDAP auth to let user select team upon creation (previously only for SAML)

Add visibility and groups filters in show mode (fix #2294)

Add owner filter in show mode (fix #3799)

Allow multiple molecules in Chemdoodle area (#3746)

Allow saving molecule/reaction in .chemjson or export to PNG

Make timestamp archives immutables (fix #3656 via PR #3736)

Allow changing directly start and end date of scheduler event

Allow users to export their experiments from their profile (see #3726)

Add "Show more information" entry in uploaded file menu

Add new dropdown menu on top right (PR #3718)

Add possibility to customize the Support link in help menu

Allow import/export of ELN files

Allow users to import files

Allow display of uploaded txt files (via #3626 by Marcel)

Dev corner:

Use APIv2 for internal calls, this resulted in a lot of code being deleted, which is a good thing.

Coverage data in html now retained by CircleCI in artifacts section

Use the Docker image for CircleCI

Use cache for php-cs-fixer

Fix issue with php-cs-fixer where excluded folders were not excluded

Do full test suite (including api) in CI

Use codeception/c3 to get line coverage of REST API calls

Fix psaml never finding any issue because of incorrect configuration

Add sonar-project.properties file for SonarQube use

Use enums (new PHP 8.1 feature)

Add REST API test to automated test suite

Lots of code rewrite, as always ;)

several contributions from Marcel Bolten that might not be mentioned above!

Source code(tar.gz)
Source code(zip)
4.3.10(Aug 3, 2022)
Fix recently introduced issue during update to schema71

Source code(tar.gz)
Source code(zip)
4.3.9(Jul 28, 2022)
Version 4.3.9

Bugfix

Fix issue with date updating through REST API

Source code(tar.gz)
Source code(zip)
4.3.8(Jul 23, 2022)
Version 4.3.8

No database update with this patch.

Bugfixes

Fix case sensitive recognition of image extension (fix #3720 via #3725 by Marcel)

Fix tags from another team not being searchable (fix #3721)

Fix MySQL error on invalid tag search

Enhancements

Set PDF/A setting OFF by default in new installs as it prevents transparency on PNG files in PDF. (see #3713)

Add name of timestamper on timestamp archive file comment

Source code(tar.gz)
Source code(zip)
4.3.7(Jul 20, 2022)
Version 4.3.7

Bugfixes

Fix steps deadline approaching notification only working with email not web

Fix tinymce mention autocompletion (when pressing '#') in tables (PR #3709 by Marcel, fix #2695)

Fix issues with tinymce image tools saving procedure (PR #3659 by Marcel, fix #3658)

Enhancements

Add a position key for metadata extra_fields so ordering can be done (PR #3699 by Marcel, fix #3056)

Source code(tar.gz)
Source code(zip)
4.3.6(Jul 3, 2022)
Version 4.3.6

Bugfixes

Fix update issue with databases enforcing primary keys (e.g. DO cluster)

Allow admin to unlock entry, and allow unlock timestamped (fix #3677)

Allow styl and class attributes on div and h{1,6} (fix #3667)

Enhancements

Vertically align "Show related" text with icon (#3675 by Marcel)

Fix gap in lists (#3674 by Marcel)

Fix attached files not getting imported with zip import (fix #3671)

Allow pasting tables with background color

Source code(tar.gz)
Source code(zip)
4.3.5(Jun 24, 2022)
Version 4.3.5

Bugfix

Fix issue with logging out with some SAML identity providers

Source code(tar.gz)
Source code(zip)
4.3.4(Jun 19, 2022)
Version 4.3.4

IMPORTANT

Read the changelog for 4.3.0 if upgrading from a previous version: https://github.com/elabftw/elabftw/releases/tag/4.3.0

Bugfixes:

Fix merged cells in tables (fix #3644)

Fix pdf failing with many images (fix #3627 via PR #3635 by Marcel)

Fix deletion related logic

Fix search containing "-" character (PR #3603 by Marcel)

Enhancements:

Allow more image types in pdf (fix #3647 via PR #3649 by Marcel)

SAML: allow to input text on entityId

Source code(tar.gz)
Source code(zip)
4.3.3(May 31, 2022)
IMPORTANT

Read the changelog for 4.3.0 if upgrading from a previous version: https://github.com/elabftw/elabftw/releases/tag/4.3.0

Version 4.3.3

Bugfixes:

Fix improper handling of the query when looking for a tag that doesn't exist in current category

Fix metadata not getting saved from editor (fix #3600)

Fix template destroy on team page

Fix template actions on team page when no items are bookable

Fix issue with pdf stopping after '<<' (fix #3032)

Enhancements:

Improve metadata editing experimence by loading it by default

Make the related links blocks togglable in view mode

Make the app more responsive (wider) and decrease padding for small screens

Allow displaying longer template titles in UCP

Source code(tar.gz)
Source code(zip)
4.3.2(May 30, 2022)
IMPORTANT

Read the changelog for 4.3.0 if upgrading from a previous version: https://github.com/elabftw/elabftw/releases/tag/4.3.0

Version 4.3.2

Bugfixes:

Fix issue with downloading files with non ascii characters in the name

Prevent deletion of users that own items

Don't show the delete button for the team you are currently logged in (fix #3597)

Source code(tar.gz)
Source code(zip)
4.3.1(May 29, 2022)
IMPORTANT

Read the changelog for 4.3.0 if upgrading from a previous version: https://github.com/elabftw/elabftw/releases/tag/4.3.0

Version 4.3.1

Bugfixes:

Fix mathjax (fix #3593)

Fix notifications not being sent if container was running with default user (fix #3594)

Source code(tar.gz)
Source code(zip)
4.3.0(May 26, 2022)
Changelog for version 4.3.0

Breaking changes:

Completely drop support for non-Docker installation method, see why.

Require MySQL version 8.0. WARNING If you are running MySQL version 5.7 or earlier, you might run into encoding issues after updating to MySQL 8.0. First make sure that you have a proper backup in UTF-8 before upgrading. You might need to re-import your backup after the upgrade if you run into encoding issues.

A new mandatory configuration option (environment variable) SITE_URL is needed. Edit your configuration file (/etc/elabftw.yml by default) and add a new environment variable SITE_URL for the web (elabftw) container, in the environment part, with a value that corresponds to the address for the instance (including the port if not custom). If this value is not set, the container will show an error and the app won't work until it is fixed. This was previously an optional setting in the instance main config, but it was causing issues, see #3319. (PR #3323). Example:

SITE_URL=https://elab.example.org

Important changes:

When deletion is requested, the entry isn't really deleted but its state is set to deleted. It is not possible anymore to actually delete something . (PR #3302)

When an uploaded file is replaced by a new version, the previous version has its state changed to archived and is kept around.

New features:

For sysadmins:

You can now configure S3 storage for uploaded files (PR #3281) (and use bin/console uploads:migrate)

Add uploads:prune command to remove deleted files from database and filesystem

The db:update command now displays important messages at the end

Add cache:clear command to clear cached files

Allow user to request access to a team after SAML authentication (issue #3244, PR #3246)

Show MySQL version in sysadmin page (#3509 by Marcel)

Add a timestamp monthly limit (#3512)

For admins:

Allow export of data from the Admin panel: experiments, items or scheduler data (PR #3445) (fix #3386)

When an event is deleted from the scheduler, Admins get a notification

For users:

Allow searching for entities in API (issue #3264, PR #3308)

New notifications system (#3363)

Revamp completely the search interface, and allow complicated search queries, mainly by Marcel Bolten (PR #3247, PR #2975, fix #2677, PR #3555, #3554)

Add import link from link function (#3488)

Allow searching for several metadata fields on search page (#3473)

Allow searching in attachments filename and comment (PR #3515 by Marcel)

Add write permissions settings when importing CSV or ZIP (fix #3559)

Many other cosmetic changes and improvements all over the application.

Bugfixes:

Fix steps block not getting updated in view mode after clicking the checkbox

Fix issue with template update on api (fix #3517)

Fix non working actions when navigating with the Favorite tags (issue #3329, PR #3331)

Fix bug where creating event resulted in changing the title of the item (issue #3326)

Actually use the Lato font for PDFs (issue #3211)

Fix team event binding behavior (PR #3301 by Marcel Bolten)

Fix page reloading on item type deletion preventing user from reading error message

Don't choke on password protected PDFs (PR #3288 by Marcel Bolten)

Avoid elabid overflow on small screens (PR #3260 by Marcel Bolten)

Fix url encoding issue in pdf qr code (issue #2940)

Fix html tags whitelisting (fix #3239)

Make sure every entity gets its own directory in zip file (#3446 by Marcel Bolten)

Fix half broken toggle body in show mode

Add possibly missing authfail table

Fix incorrect proxy setting for timestamping request (fix #3157)

Fix metadata not being duplicated for items (fix #3413)

Move show related action button (fix #3391)

Fix #3392, show mode issues

Fix issue with step edition/reload of element (#3506 by Marcel)

Fix incorrect parsing of query params for api (fix #3513)

Allow images to be centered (fix #3368)

Filter out archived users from user list autocomplete in admin panel (fix #3571)

Fix select elements in show mode menu

Enhancements:

Improve the edit users interface (PR #3551)

More robust exif reading for files with incorrect extension

Add link to register page after install script is done

Add user email on team group autocomplete (fix #3528)

Improve json editor/doodle/chemddoodle interface (PR #3526)

Always add the thumbnail image in pdf, not the full resolution one (fix #3103)

Minor API documentation fixes by Henning Timm (PR #3327)

Prevent issues when pasting from Word (issue #3193)

Append PDFs in multi mode (PR #3303 by Marcel Bolten)

Add user notification when things fail during PDF generation (PR #3283 by Marcel Bolten)

Improve some UI elements (PR #3304, PR #3259, PR #3257 by Marcel Bolten)

Better handling of MathJax errors (PR #3155, see #3076, fix #3076, by Marcel Bolten)

Order linked items by category, then date, then title (fix #3280)

During CSV import, interpret the "tags" column to add tags (fix #3101)

Prevent modification of events in the past in scheduler (unless user is admin)

Add team selection filter on sysadmin panel/Users tab (fix #2764, PR #3444 by Marcel)

And other cosmetic enhancements by Marcel

Steps can now have a deadline set (#3415), with possibility to receive a notification, and the times are editable

Add confirmation dialog when unfinishing a step

Improve SAML implementation (#3389 by Maximilian H). Add certificate rollover (#2951)

Add a sysadmin option to disable blockchain timestamping

Add a sysadmin option to anonymize user for blockchain stamp

Add metadata to CSV export

Allow target=_blank on links (fix #3367)

Prevent link input fiend being squashed if category has a long name (#3508 by Marcel)

Add a "now" line on scheduler

There is only one type of Admin now (no more the Admin/Admin + lock power distinction) (#3484)

Disallow api entity update action if entity is locked (fix #3433)

Simplify timestamp configuration by removing admin level config (#3512)

Only send ajax requests if data is changed (#3511 by Marcel)

Force selection of a file when replacing an upload

Drop plasmid viewer user setting (#3572)

Ignore mathjax in tags (fix #3570)

Make all status timestampable (#3567)

Dev corner:

Add many unit tests

Charset utf8mb4 and collate utf8mb4_0900_ai_ci for all tables

Rework of storage code to allow uploading to s3, use of flysystem v3

Update twig to v3

Filesize column added to uploads so we don't need to read filesystem every time

Scrutinizer-ci is now using a custom docker image (by Marcel)

jquery-jeditable library now replaced by malle, a modern library created by Nicolas CARPi

MySQL fixes and enhancements by Marcel (#3431, see #3411, #3490, #3491, #3480, #3475, #3521)

CircleCI changes (#3520 by Marcel)

Big thanks to Marcel Bolten for his many contributions to this release!
Source code(tar.gz)
Source code(zip)
4.3.0-beta5(May 18, 2022)

Changes since beta4: https://github.com/elabftw/elabftw/compare/4.3.0-beta4...4.3.0-beta5?expand=1

Full changelog: https://github.com/elabftw/elabdoc/blob/master/doc/changelog.rst
Source code(tar.gz)
Source code(zip)
4.3.0-beta4(May 13, 2022)

Changes since beta3: https://github.com/elabftw/elabftw/compare/4.3.0-beta3...4.3.0-beta4?expand=1

Full changelog: https://github.com/elabftw/elabdoc/blob/master/doc/changelog.rst
Source code(tar.gz)
Source code(zip)